In this study, Boltzmann inversion is applied in conjunction with molecular dynamics simulations to derive inter-molecular potential for protein lysozyme in aqueous solution directly from experimental static structure factor. The potential has a soft repulsion at short distances and an attraction well at intermediate distances that give rise to the liquid-liquid phase separation. Moreover, Gibbs ensemble Monte Carlo simulations demonstrate that a non-spherical description of lysozyme is better suited to correctly reproduce the experimentally observed properties of such a phase separation. Our findings shed new light on the common problem in molecular and cell biology: “How to model proteins in their natural aqueous environments?”

Softness and non-spherical shape define the phase behavior and the structural properties of lysozyme in aqueous solutions

COSTA, Dino
Penultimo
;
CACCAMO, Carlo
Ultimo
2016-01-01

Abstract

In this study, Boltzmann inversion is applied in conjunction with molecular dynamics simulations to derive inter-molecular potential for protein lysozyme in aqueous solution directly from experimental static structure factor. The potential has a soft repulsion at short distances and an attraction well at intermediate distances that give rise to the liquid-liquid phase separation. Moreover, Gibbs ensemble Monte Carlo simulations demonstrate that a non-spherical description of lysozyme is better suited to correctly reproduce the experimentally observed properties of such a phase separation. Our findings shed new light on the common problem in molecular and cell biology: “How to model proteins in their natural aqueous environments?”
2016
Inglese
STAMPA
144
1
015103-1
015103-4
4
http://scitation.aip.org/content/aip/journal/jcp
Internazionale
Esperti anonimi
Muramidase; Protein Conformation; Solutions; Water; Molecular Dynamics Simulation; Physics and Astronomy (all); Physical and Theoretical Chemistry
info:eu-repo/semantics/article
Baumketner, A; Melnyk, R.; Holovko, M. F.; Cai, W.; COSTA, Dino; CACCAMO, Carlo
14.a Contributo in Rivista::14.a.1 Articolo su rivista
6
262
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11570/3104665
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